Workshop: Automated analysis of elevation data in R+SAGA/GRASS

Published: Aug 25, 2009 by ISG Board

Workshop moderators:

  1. Tomislav Hengl (University of Amsterdam)
  2. Carlos H. Grohmann (University of Sao Paulo)

Location: Room 25H86/92. This is a double room with a divider. Access will be through a locked door.

Internet: YES (Ethernet)

Please let us know about your impression of SAGA/GRASS by filling out this web-form.

Literature:

Fig: Room 25H86/92

Daily programme:


DAY 1 29.08.2009

0900-1030

Introduction to the workshop
Introduction to SAGA/GRASS; history and main functionality; the role of open source software; (T. Hengl, C.H. Grohmman)

1030-1100Coffee break
1100-1300Installation of necessary packages (R, SAGA, GRASS, Google Earth)
 Introduction to the case study: “Fishcamp”
 Computer exercises in SAGA: loading data, running SAGA commands from R and scripting, interpretation of results (T. Hengl, C.H. Grohmman)
1300-1400Lunch
1400-1600Computer exercises (individual)
1545-1615Coffee break
1615-1730Solving computer exercises (with assistance)
 Q & A’s / final discussion (T. Hengl)
2030-23:00Dinner at the campus (optional)

DAY 2 30.08.2009

0930-1030

Introduction to GRASS GIS: main functionality and operations; GRASS syntax (C.H. Grohmman)

1030-1100Coffee break
1100-1300

Computer exercises in GRASS: loading data, running GRASS commands from R and scripting, interpretation of results (demonstration)

 (C.H. Grohmman, T. Hengl)
1300-1400Lunch
1400-1530Computer exercises (individual)
1530-1545Coffee break
1615-1730Solving computer exercises (C.H. Grohmman)
 Q & A’s / SAGA verus GRASS questionairre (T. Hengl)
2000-lateDinner in the city (optional)

Late registrations: 15th of August; after that no more registrations are possible;

Description: This workshop aims at PhD students and professionals interested to use open source software packages for processing of their elevation data. R is the open-source version of the S language for statistical computing; SAGA (System for Automated Geoscientific Analyses) and GRASS (Geographic Resources Analysis Support System) are the two most used open-source desktop GIS for automated analysis of elevation data. A combination of R+SAGA/GRASS provides a full integration of statistics and geomorphometry. The topics in this workshop will range from selection of grid cell size, choice of algorithms for DEM generation and filtering, to geostatistical simulations and error propagation. The workshop moderators will demonstrate that R+SAGA/GRASS is capable of handling such demanding tasks as DEM generation from auxiliary maps, automated classification of landforms, and sub-grid parameterization of surface models.

The course will focus on understanding R and SAGA/GRASS syntax and building scripts that can be used to automate DEM-data processing. Each participant should come with a laptop PC and install all software needed prior to the workshop. Registered participants will receive an USB stick with all data sets and overheads at the beginning of the course.
Participants will follow a case study that focuses on generation of DEMs, extraction of DEM parameters and landform classes, and implementation of error propagation in geomorphometry.


SOFTWARE INSTALLATION:

Please make sure you come to this workshop with software already installed and running. You need to install at least (please respect the chronological order):

  1. R (2.9)
    • after the installation open R and install necessary packages (install.views(“Spatial”))
    • install separately packages “spgrass6” and “RSAGA”
  2. Tinn-R
  3. GRASS GIS (6.4)
  4. SAGA GIS (2.0.3)
    • the latest version of SAGA will be distributed at the beginning of the workshop!

For simplicity, try to come with a Windows OS, possibly with a dual boot (Linux or Mac OS as the 2nd OS).
Here are some examples of code that you could test under your machine.

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DEMIX reveals which DEMs perform best

First round of the DEMIX exercise published final report

Global digital elevation models (DEMs) have become routine operational inputs across mapping, environmental monitoring, modelling and Earth-observation workflows. Their broad coverage and global availability have made them data that many practitioners simply take for granted. But knowledge of the terrain and topography of Earth’s surface is fundamental for monitoring and understanding terrestrial ecosystems and the planet’s habitability. For that reason, the CEOS Working Group on Calibration and Validation (WGCV) maintains a subgroup dedicated to digital topography and the quality of DEMs, the ‘Terrain Mapping Sub-Group (TMSG).

DEMs are representations of elevation in the form of a georectified grid, at global scale commonly derived from space-based interferometric synthetic aperture radar (InSAR) or stereoscopic optical observations, while regionally and locally airborne Laser induced detection and ranging (LIDAR) has become the primary source. DEMs can be classified as digital surface models (DSMs) when depicting the lower surface of the atmosphere or digital terrain models (DTMs) when depicting the top of the lithosphere (the Earth’s crust).

A wide variety of DEM products exist – each having different characteristics which suit different applications. It can be challenging to understand which of the available DEM products are fit for purpose for certain applications or regions. That is the practical gap addressed by the Digital Elevation Model Intercomparison Exercise (DEMIX) undertaken by TMSG. By exposing where widely used global DEMs agree, where they differ and how those differences affect rankings, the exercise delivered evidence to users for selecting a DEM rather than defaulting to one by habit.

DEM products were compared through a ‘wine contest,’ which identified requirements of openness, reproducibility, adaptability, and statistical rigour. The characteristics, evaluations, and ranking for each DEM were collected in a GIS database with over 50,000 entries. A quantitative assessment was carried out for each global DEM based on pixel-by-pixel differences of geomorphometric parameters against finer spatial resolution (1-5 m resolution) reference DEMs.

The study incorporates an unprecedented amount of high quality reference data covering a broad range of landforms and surface types, comparing their characteristics without resampling or interpolation. Users are invited to consult the results of DEMIX in order to make informed choices when needing to use a DEM, or in some cases a combination of the most relevant DEMs for their applications.

The final rankings of the wine contest, presented below, compared the six DEMs based on land cover (forest, urban, or barren), slope (cliff, steep, gentle, or flat), differences in elevation, slope and roughness, and statistical metrics.

Led by the European Commission’s Joint Research Centre (JRC), the CEOS Working Group on Calibration and Validation (WGCV) Terrain Mapping Subgroup (TMSG) established DEMIX in partnership with the International Society for Geomorphometry. Several members of the International Society of the Geomorphometry contributed significantly and we hosted various secssions at our latest conference. The exercise was performed over a three-year period starting in 2020, with community-wide calls for participation and an assembly of experts producing a number of peer-reviewed publications, culminating with a JRC reference report published in July 2026.

The objective of DEMIX was to propose a procedure to rank the available free and open global DEMs, taking into consideration user needs while promoting the implementation of FAIR (Findable, Accessible, Interoperable and Reusable) principles. The exercise compared DEMs based on criteria for land cover and terrain slope categories, representative testing, and a statistically sound ranking approach. The report outputs tailored recommendations regarding available DEM products that are not limited to one domain, geographic area, or landscape type, with flexibility for different user needs and applications.

A major challenge in the comparison of the global DEMs were the varying formats, data, and metadata contents. The adoption of a common set of standards would enhance the quality and interoperability of global DEMs and streamline the exchange and utilisation of DEM data for both providers and users. DEMIX makes the following recommendations for data providers:

● Adopt a standardised grid layout, with complete grid definitions and encodings following ISO/OGC rules.

● Include vertical datum information as part of raster DEM files.

● Clearly indicate the product version in the file names.

● Participate in future DEMIX rounds, which serve as a neutral platform for independently evaluating products before their release.

● Provide high quality, finer resolution, accurate, and multi-temporal elevation data to be used as a reference alongside DEM products.

Global DEMs are indispensable operational geospatial datasets, but they should not be treated as error-free or interchangeable. DEMIX delivered to the global community a systematic and transparent method to help choose elevation products more intelligently and help define what better elevation measurements should look like in the future.

Further Reading:

Read more in the DEMIX Final Report, or see other DEMIX publications below - mainly by our ISG members:

  • Benchmarking Elevation Plus Land Surface Parameters Finds FathomDEM and Copernicus DEM Win as Best Global DEMs (2025) and subsequent discussion (2026a, 2026b)
  • Ranking of 10 Global One-Arc-Second DEMs Reveals Limitations in Terrain Morphology Representation 2025
  • Novel Approach for Ranking DEMs: Copernicus DEM Improves One Arc Second Open Global Topography (2024)
  • Digital Elevation Models: Terminology and Definitions (2021)
  • The Digital Elevation Model Intercomparison eXperiment DEMIX, a community-based approach at global DEM benchmarking (2021)

Coffee Talk - GeoNadir

Building the world’s largest repository of FAIR drone mapping data

Paul Mead GeoNadir

September 2nd, 2026
11:30 (UTC)

Bio: Paul Mead is Co-founder and Head of Business & Strategy at GeoNadir, a platform building the world’s largest repository of FAIR drone mapping data to support environmental decision-making. A non-technical co-founder, Paul focuses on strategy, commercial development, and building high-performing teams — a discipline shaped by 11 years in the New Zealand Army, including leading a bomb disposal team in Lebanon and service in Afghanistan and the Asia-Pacific region. Since 2013 he has built and led several small businesses and start-ups, with drones as a central technology since 2016. Alongside GeoNadir, Paul co-founded She Maps, an internationally recognised drone and geospatial STEM education organisation, and has helped raise over $7M in equity and non-equity funding across his ventures. He holds a Master of Philosophy from the University of Queensland and is a Chartered Manager.

Abstract: GeoNadir set out to build the world’s largest repository of FAIR drone mapping data, and ended up building something more powerful. Drones have democratised data capture, but the same democratised ability to generate decision-grade insights from the data is lacking. I’ll walk through how we’re closing that gap: the data infrastructure behind hosting large volumes of UAV imagery and derived products, and how we’re moving from manual analysis toward automated, repeatable geospatial analytics.

Coffee Talk - Geomorphometry with GRASS

Geomorphometry with GRASS

Dr. Corey T. White Center for Geospatial Analytics at NCSU, USA

April 1st, 2026
14:00 (UTC)

Recording available in our YouTube channel

Bio: Corey White is a geospatial research software engineer with the Center for Geospatial Analytics at North Carolina State University and a maintainer of the open-source GRASS project. He is also the founder of OpenPlains Inc., an open-source web-based platform for interactive geospatial modeling. His work sits at the intersection of geomorphometry, environmental modeling, UAS mapping, and open-source software development, with a focus on making interactive terrain analysis accessible and reproducible. He has applied GRASS to problems ranging from post-disaster topographic change detection following Hurricane Helene to designing a participatory geospatial modeling platform to address ‘wicked’ socio-environmental problems. Corey is an active member of the OSGeo community and an advocate for open geospatial science.

Abstract: GRASS is a modern, actively developed, and extensible geospatial processing engine for geomorphometry. This session draws on post-Hurricane Helene landscape change analysis and ongoing addon development for DEM data fusion, terrain uncertainty modeling, and overland flow simulation to showcase what GRASS does well and where it fits in contemporary geomorphometric practice. Beyond its core analytical capabilities, GRASS’s Python, R, and Jupyter integration make it straightforward to build reproducible, scriptable terrain workflows that move easily from exploration to publication. Join this informal discussion to explore how GRASS serves not only as a research tool but as a community platform where geomorphometric methods can be developed, shared, and reused through its open addon ecosystem.